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    Home » Paleo

    Published: Oct 19, 2021 · Modified: Nov 15, 2021 by Emilee Mason · Leave a Comment

    Paleo Pumpkin Chocolate Chip Muffins with Crumb Topping

    Jump to Recipe Print Recipe

    These Paleo Pumpkin Chocolate Chip Muffins with Crumb Topping are grain-free, gluten-free, and delicious! Naturally sweetened, they make a great healthy treat and are perfect for fall and pumpkin season! The sweet and slightly crunchy paleo crumb topping compliments these muffins so well, the entire family will love them!

    A paleo pumpkin chocolate chip muffin with a bite take out on a cooling rack
    Jump to:
    • Why you’ll love this recipe
    • Ingredients Needed
    • How to make this recipe
    • Frequently Asked Questions (FAQ’s)
    • More Paleo Baked Goods
    • 📖 Recipe

    Why you’ll love this recipe

    • They make a quick and easy breakfast or snack: These muffins are great for on the go and busy school mornings! Simply grab one and reheat in the microwave (or not!) and enjoy!
    • These pumpkin muffins are perfectly spiced: They have a great pumpkin spice flavor without being overwhelming. They are great for the entire family!
    • They’re easy to make: This recipe comes together in no time with simple ingredients and only two bowls!
    • Free from refined sugars: As with all of our recipes, these muffins are free from refined sugars which means I can feel good about indulging and serving them to my boys!
    A stack of paleo pumpkin chocolate chip muffins on a white wood background near cinnamon sticks and chocolate chips

    Ingredients Needed

    An overview shot of the ingredients needed for paleo pumpkin muffins with chocolate chips
    • Blanched Almond Flour: Almond flour is my favorite ingredient to use in gluten free and grain free baked goods! Be sure to use blanched almond flour, meaning the skins are removed, for the best texture of these muffins.
    • Tapioca Flour: I typically always add a little bit of tapioca flour to baked goods to give them that slightly crispy and chewy outside texture that is perfect for breads and cookies!
    • Canned Pumpkin Puree: Make sure it’s not pumpkin pie filling!
    • Coconut Sugar: A great refined sugar free option, using coconut sugar gives these muffins a great texture while remaining moist but not too moist.
    • Chocolate Chips: I prefer to chop Hu Chocolate bars into chunks, or use Enjoy Life Foods mini chocolate chips and dark chocolate morsels.

    For Paleo Crumble

    The paleo crumble adds a delicious texture and sweet crunch to these pumpkin muffins!

    • Pecans: Pecans can easily be swapped out for walnuts as well!
    • Ghee: The ghee gives this crumble a delicious and buttery flavor.

    How to make this recipe

    1. Mix dry ingredients: In a large bowl mix the almond flour, tapioca flour, pumpkin pie spice, salt and baking powder.
    2. Mix wet ingredients: In a separate bowl, whisk together the pumpkin puree, eggs, coconut sugar, and vanilla.
    3. Combine the wet and dry ingredients: Add the wet ingredients to the dry ingredients and mix together well.
    4. Fold in the chocolate chips. Set aside the muffin batter while you make a crumble to allow the tapioca flour to absorb more liquid before baking.
    5. Make the crumble: In a small bowl add all ingredients for the crumble and using the back of a fork or a pastry cutter, mix ingredients to form a crumble.
    6. Prepare the muffin pan: Prepare the muffin pan with liners.
    7. Divide the batter: Fill each muffin cup nearly all the way full, evenly dividing the batter between the 12 muffin liners.
    8. Top with crumble: Evenly divide the crumble between the 12 muffins and very gently press down into the batter.
    9. Bake the muffins: Bake at 350F for 25 to 30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
    10. Let the muffins cool: Allow the muffins to cool in the pan for 5 minutes and then gently remove them from the pan and transfer to a cooling rack. Let them cool completely before storing!
    11. Enjoy!
    An overview shot of two bowls containing wet and dry ingredients for paleo pumpkin and chocolate chip muffins
    Mix dry ingredients in one bowl and wet ingredients plus sugar in a second bowl.
    An overview shot of one bowl containing wet and dry ingredients being mixed for pumpkin muffins
    Add wet ingredients to the dry ingredients and mix well.

    An overhead shot of pumpkin muffin batter with almond flour and chocolate chipss on a white background
    Fold in the chocolate chips and allow to sit while preparing the crumb topping.
    A mini food processor containing the ingredients for a paleo crumb topping near a muffin tin full of paleo pumpkin muffin batter
    Add all ingredients for the crumb topping to a food processor and pulse or mix with fork.
    An overhead for of paleo pumpkin muffins in a muffin tin ready to go into the oven

    Frequently Asked Questions (FAQ’s)

    What’s the best way to store these muffins?

    These muffins are best stored in an airtight container in the fridge for up to 4 days. I like to store them with a paper towel to absorb any moisture and prevent them from becoming too moist while storing.

    Can I use almond meal?

    No, I recommend sticking with unblanched almond flour for this recipe. Almond meal is simply ground almonds containing the skin. It is far more coarse than almond flour and will typically cause your baked goods to have a much different texture and be far more dense than almond flour.

    Can I substitute another gluten free flour for the almond flour?

    Unfortunately, most gluten free flours (such as almond flour, coconut flour, and tapioca flour) can NOT be substituted for one another on a one to one ratio. That being said, I never recommend substituting one gluten free flour for another in any recipe unless specifically stated that it has been tested.

    A paleo pumpkin chocolate chip muffin with a bite take out on a cooling rack

    More Paleo Baked Goods

    • Peach cobbler in a cast iron skillet topped with a scoop of melting ice cream and cinnamon.
      Cast Iron Peach Cobbler: Paleo, Gluten Free
    • A close up photo of a chocolate cupcake with chocolate buttercream swirl on a wire cooling rack.
      Gluten-Free Chocolate Cupcakes
    • A stack of donuts half glazed and half chocolate on a wire cooling rack.
      Healthy Baked Donuts
    • A stack of almond flour shortbread cookies that had been dipping in chocolate.
      Paleo Shortbread Cookies

    Love this recipe? Consider leaving a 5-star 🌟rating in the recipe card below and/or a review in the comments section further down the page. We LOVE to hear from you!

    📖 Recipe

    A stack of paleo pumpkin chocolate chip muffins on a white wood background near cinnamon sticks and chocolate chips

    Paleo Pumpkin Chocolate Chip Muffins with Crumb Topping

    Emilee Mason
    These Paleo Pumpkin Chocolate Chip Muffins with Crumb Topping are grain-free, gluten-free, and delicious! Naturally sweetened, they make a great healthy treat and are perfect for fall and pumpkin season! The sweet and slightly crunchy paleo crumb topping compliments these muffins so well, the entire family will love them!
    5 from 4 votes
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 30 minutes mins
    Total Time 40 minutes mins
    Course Breakast, Paleo Baked Good
    Cuisine American
    Servings 12 Muffins
    Calories 319 kcal

    Ingredients
      

    • 1 ½ cup blanched almond flour
    • ¼ cup tapioca flour
    • 2½ tsp pumpkin pie spice
    • 1½ tsp baking powder
    • ½ tsp salt
    • 1 cup pumpkin puree not pumpkin pie filling
    • 3 large eggs
    • ⅔ cup coconut sugar
    • 1 tsp vanilla
    • 1 cup chocolate chips see notes

    Paleo Crumb Topping

    • ¾ cup almond flour
    • ¾ cup pecans very finely chopped
    • 3 tbsp ghee solid, not melted
    • ¼ cup coconut sugar
    • 1 tsp pumpkin pie spice

    Instructions
     

    • In a large bowl mix the dry ingredients together; almond flour, tapioca flour, pumpkin pie spice, salt and baking powder.
    • In a separate bowl, whisk together the wet ingredients and the sugar; pumpkin puree, eggs, coconut sugar, and vanilla.
    • Add the wet ingredients to the dry ingredients and mix together well.
    • Fold in the chocolate chips and set aside the muffin batter while you make a crumble to allow the tapioca flour to absorb more liquid before baking.
    • In a small bowl add all ingredients for the crumble and using the back of a fork or a pastry cutter, mix ingredients to form a crumble.
    • Prepare the muffin pan with liners and give the muffin batter one final mix. Fill each muffin cup nearly all the way full, evenly dividing the batter between the 12 muffin liners.
    • Evenly divide the crumble between the 12 muffins and very gently press down into the batter.
    • Bake at 350F for 25 to 30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
    • Allow the muffins to cool in the pan for 5 minutes and then gently remove them from the pan and transfer to a cooling rack. Let them cool completely before storing and enjoy!

    Notes

    • Be sure you are using blanched almond flour and not almond meal.  Almond meal is simply ground almonds containing the skin. It is far more coarse than almond flour and will typically cause your baked goods to have a much different texture and be far more dense than almond flour.
    • I prefer to chop Hu Chocolate bars into chunks, or use Enjoy Life Foods mini chocolate chips and dark chocolate morsels to keep these paleo and dairy free.
    • These muffins are best stored in an airtight container in the fridge for up to 4 days. Store them with a paper towel to absorb any moisture and prevent them from becoming too moist while storing.
    • Unfortunately, most gluten free flours can NOT be substituted for one another on a one to one ratio. That being said, I never recommend substituting one gluten free flour for another in any recipe unless specifically stated that it has been tested.

    Nutrition

    Calories: 319kcalCarbohydrates: 27gProtein: 7gFat: 23gSaturated Fat: 6gPolyunsaturated Fat: 2gMonounsaturated Fat: 4gTrans Fat: 1gCholesterol: 59mgSodium: 197mgPotassium: 90mgFiber: 4gSugar: 15gVitamin A: 3250IUVitamin C: 1mgCalcium: 94mgIron: 2mg
    Did you try this recipe?Leave a comment below and let me know on instagram @theprimitivedish!
    « Roasted Butternut and Beetroot Salad
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    About Emilee Mason

    Emilee Mason is a Whole30 certified coach, food photographer, and recipe developer. As a health foodie, grill enthusiast, and mom of two young boys she has a passion for creating healthy, delicious, and family friendly recipes that are simple and fun to make!

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    My name is Emilee. I'm a fire wife, boy mom, and lover of grilling and smoking real foods and paleo desserts!

    I'm glad you're here and hope you'll follow along on this healthy living journey, one delicious meal {or cupcake} at a time!

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